The experimental ChIA-PET and HiChIP datasets were accessible through GEO number, we chose studies conducted on the same cell type and with the same antibody for ChIA-PET and HiChIP. To evaluate the data quality, we calculated UV Rate for each dataset.
| Dataset_ID | Technique | Source | Organism | Biosample | Chip antibody | Total cells | Replication | Total reads | UV Rate | Download |
|---|---|---|---|---|---|---|---|---|---|---|
| dataset_1 | ChIA-PET | GSE57911 | Mus musculus | Embryonic stem cells (ESCs) | SMC1 | 100 million | rep1 | 221,653,525 | 18.70%±7.80% | 11.4Gb |
| ChIA-PET | GSE57911 | Mus musculus | Embryonic stem cells (ESCs) | SMC1 | 100 million | rep2 | 176,705,499 | 22.95%±13.60% | 11.4Gb | |
| dataset_2 | HiChIP | GSE80820 | Mus musculus | Embryonic stem cells (ESCs) | SMC1 | 10 million | rep1 | 158,615,491 | 47.81%±8.30% | 8.7Gb |
| HiChIP | GSE80820 | Mus musculus | Embryonic stem cells (ESCs) | SMC1 | 11 million | rep2 | 152,692,390 | 49.91%±7.25% | 8.6Gb | |
| HiChIP | GSE80820 | Mus musculus | Embryonic stem cells (ESCs) | SMC1 | 12 million | rep3 | 125,092,224 | 49.59%±7.08% | 7.1Gb | |
| HiChIP | GSE80820 | Mus musculus | Embryonic stem cells (ESCs) | SMC1 | 10 million | rep4 | 148,671,713 | 48.15%±8.17% | 8.3Gb | |
| dataset_3 | ChIA-PET | GSE59395 | Homo sapiens | K562 | H3K27ac | 100 million | rep1 | 177,322,797 | 20.09%±7.90% | 21.2Gb |
| ChIA-PET | GSE59395 | Homo sapiens | K562 | H3K27ac | 100 million | rep2 | 165,109,173 | 13.34%±2.90% | 22.1Gb | |
| dataset_4 | HiChIP | GSE101498 | Homo sapiens | K562 | H3K27ac | 25 million | rep1 | 213,165,389 | 54.61%±6.54% | 10.9Gb |
| HiChIP | GSE101498 | Homo sapiens | K562 | H3K27ac | 25 million | rep2 | 155,907,950 | 52.08%±8.39% | 10.9Gb | |
| HiChIP | GSE101498 | Homo sapiens | K562 | H3K27ac | 25 million | rep3 | 178,162,951 | 51.22%±3.95% | 9.1Gb | |
| dataset_5 | ChIA-PET | GSE39495 | Homo sapiens | K562 | CTCF | 100 million | rep1 | 195,436,387 | 3.23%±0.40%M | 6.9Gb |
| dataset_6 | ChIA-PET | GSE59395 | Homo sapiens | GM12878 | RAD21 | 100 million | rep1 | 225,434,403 | 7.17%±1.16% | 18.4Gb |
| ChIA-PET | GSE59395 | Homo sapiens | GM12878 | RAD21 | 100 million | rep2 | 138,472,402 | 13.43%±4.52% | 29.2Gb | |
| dataset_7 | HiChIP | GSE99519 | Homo sapiens | K562 | YY1 | 10 million | rep1 | 47,949,493 | 58.872%±4.50% | 2.9Gb |
| HiChIP | GSE99519 | Homo sapiens | K562 | YY1 | 10 million | rep2 | 31,106,021 | 59.183%±8.20% | 1.8Gb | |
| dataset_8 | HiChIP | GSE101498 | Homo sapiens | GM12878 | H3K27ac | 25 million | rep1 | 332,279,257 | 43.793%±5.74% | 21.7Gb |
| HiChIP | GSE101498 | Homo sapiens | GM12878 | H3K27ac | 25 million | rep2 | 299,478,736 | 43.28%±6.26% | 19.7Gb |